Index

A

asymptotic_wilcoxon() (in module illico.asymptotic_wilcoxon)

C

check_if_sorted() (in module illico.utils.ranking) check_indices_sorted_per_parcel() (in module illico.utils.ranking) chunk_and_fortranize() (in module illico.utils.math) compute_pval() (in module illico.utils.math) compute_sparsity() (in module illico.utils.math) counts (illico.utils.groups.GroupContainer attribute) CSC (illico.utils.registry.KernelDataFormat attribute)

csc_ovo_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovo.sparse_ovo) csc_ovr_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovr.sparse_ovr) CSCDataHandler (class in illico.utils.registry) CSR (illico.utils.registry.KernelDataFormat attribute) csr_ovo_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovo.sparse_ovo) csr_ovr_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovr.sparse_ovr) CSRDataHandler (class in illico.utils.registry)

D

DataHandler (class in illico.utils.registry) DataHandlerRegistry (class in illico.utils.registry) DENSE (illico.utils.registry.KernelDataFormat attribute) dense_fold_change() (in module illico.utils.math) dense_ovo_mwu_kernel() (in module illico.ovo.dense_ovo)

dense_ovo_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovo.dense_ovo) dense_ovr_mwu_kernel_over_contiguous_col_chunk() (in module illico.ovr.dense_ovr) DenseDataHandler (class in illico.utils.registry) diff() (in module illico.utils.math) DispatcherRegistry (class in illico.utils.registry)

E

encode_and_count_groups() (in module illico.utils.groups)

encoded_groups (illico.utils.groups.GroupContainer attribute) encoded_ref_group (illico.utils.groups.GroupContainer attribute)

F

fetch() (illico.utils.registry.DataHandler method) (illico.utils.registry.H5pyBackedCSCDataHandler method) (illico.utils.registry.H5pyDatasetDataHandler method) (illico.utils.registry.InRAMDataHandler method) fold_change_from_summed_expr() (in module illico.utils.math)

footprint() (illico.utils.registry.CSCDataHandler method) (illico.utils.registry.CSRDataHandler method) (illico.utils.registry.DataHandler method) (illico.utils.registry.DenseDataHandler method) (illico.utils.registry.H5pyBackedCSCDataHandler method) (illico.utils.registry.H5pyDatasetDataHandler method)

G

get() (illico.utils.registry.DataHandlerRegistry method) (illico.utils.registry.DispatcherRegistry method)

GroupContainer (class in illico.utils.groups)

H

H5pyBackedCSCDataHandler (class in illico.utils.registry)

H5pyDatasetDataHandler (class in illico.utils.registry)

I

illico.asymptotic_wilcoxon module illico.ovo.dense_ovo module illico.ovo.sparse_ovo module illico.ovr.dense_ovr module illico.ovr.sparse_ovr module illico.utils.compile module illico.utils.groups module illico.utils.math module

illico.utils.memory module illico.utils.ranking module illico.utils.registry module illico.utils.type module indices (illico.utils.groups.GroupContainer attribute) indptr (illico.utils.groups.GroupContainer attribute) input_signature() (illico.utils.registry.CSCDataHandler method) (illico.utils.registry.CSRDataHandler method) (illico.utils.registry.DataHandler method) (illico.utils.registry.DenseDataHandler method) (illico.utils.registry.H5pyBackedCSCDataHandler method) InRAMDataHandler (class in illico.utils.registry)

K

kernel_data_format() (illico.utils.registry.CSCDataHandler method) (illico.utils.registry.CSRDataHandler method) (illico.utils.registry.DataHandler method) (illico.utils.registry.DenseDataHandler method)

KernelDataFormat (class in illico.utils.registry)

L

log_memory_usage() (in module illico.utils.memory)

M

module illico.asymptotic_wilcoxon illico.ovo.dense_ovo illico.ovo.sparse_ovo illico.ovr.dense_ovr illico.ovr.sparse_ovr illico.utils.compile illico.utils.groups illico.utils.math illico.utils.memory illico.utils.ranking illico.utils.registry illico.utils.type

multi_group_sparse_ovo_mwu_kernel() (in module illico.ovo.sparse_ovo)

O

OVO (illico.utils.registry.Test attribute)

OVR (illico.utils.registry.Test attribute)

P

pvalue (illico.utils.type.TestResults attribute)

R

rank_sum_and_ties_from_sorted() (in module illico.utils.ranking)

register() (illico.utils.registry.DataHandlerRegistry method) (illico.utils.registry.DispatcherRegistry method)

S

sampled_max() (in module illico.utils.math) single_group_sparse_ovo_mwu_kernel() (in module illico.ovo.sparse_ovo)

sort_along_axis() (in module illico.utils.ranking) sparse_ovr_mwu_kernel() (in module illico.ovr.sparse_ovr) statistic (illico.utils.type.TestResults attribute)

T

Test (class in illico.utils.registry) TestResults (class in illico.utils.type) to_nb() (illico.utils.registry.CSCDataHandler class method) (illico.utils.registry.CSRDataHandler class method) (illico.utils.registry.DataHandler method) (illico.utils.registry.DenseDataHandler class method) (illico.utils.registry.H5pyBackedCSCDataHandler class method)